Short answer
Why didn't we define temperature as a kind of energy?
Because it was impossible from a practical perspective. Temperature is the quantity you measure with thermometers, and we have only been able to create thermometers that directly measure thermal energies, to sufficient accuracy, in the past couple of decades.
Why don't we define temperature as a kind of energy?
Because it is now too late to change the unit system without an extreme level of disruption.
Long answer
Other answers have addressed the conceptual and thermodynamical aspects. However, there is also a much more mundane aspect: until recently, the redefinition you propose was simply not practically possible, because it was not feasible to measure temperature (to sufficient accuracy) using that definition.
Until recently, and since 1954, the kelvin was defined by fixing the triple point of water at $273.16\:\rm K$. This choice is distinctly practical: the triple point of water is a very specific temperature, and it is quite easy to create a cylinder with water and to identify when it reaches its triple point. This creates a physical system at the temperature that defines the kelvin, and you can then use this physical system as a primary metrological standard to calibrate any thermometer.
On the other hand, if you wanted to define the kelvin by fixing the value of the Boltzmann constant (either to unity, as you propose, or, as an alternative, to some arbitrary value), then you face a challenge when you want to create or calibrate a real-world thermometer. To do this, you would need, as the BIPM puts it,
a thermometer based on a well-understood physical system, for which the equation of state describing the relation between thermodynamic temperature $T$ and other independent quantities, such as the ideal gas law or Planck's equation, can be written down explicitly without unknown or significantly temperature-dependent constants.
In other words, your new "primary" thermometer needs to be a system for which you completely and thoroughly understand the thermodynamics from the ground up, with no layers of empirical or semi-empirical modelling. When the kelvin was defined, in 1954, this was an unattainable ideal.
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... but that's no longer the case. Over the past couple of decades, it has been possible to consolidate our understandings of the ideal gas law, and of the Planck radiation equation, into complete thermometers (respectively, acoustic gas thermometers and radiometric thermometers) which are as accurate, repeatable and reproducible as primary standards calibrated against the triple point of water.
And this is why, in 2019, the kelvin was redefined so that it is now based on a fixed value of the Boltzmann constant. (For a detailed look, see this previous answer of mine.) This redefinition, for all practical purposes, implements the change you proposed, retaining only a nominal layer of conceptual difference between temperature and energy. If we wanted to, it would be possible to reform the SI unit system to remove temperature as an independent base unit, and retain all of our existing metrological capabilities.
However, that change would be extremely disruptive, with very little clear gains from the change. Like it or not, the core structure of the SI (including the number and choice of base units) is by now fixed and too hard to change, even if several of the choices that we used to define it now make relatively little sense when compared against the reformed definitions. (For a similar, stronger case, see this discussion regarding the ampere.) These underpinnings are still reasonable enough that it's not fatal to keep them, so they'll be around for a long time.