While there is an origin for the position operator $\vec r$, and therefore the angular momentum $\vec L = \vec r \times \vec p$ has an origin, it is a little glib to say that there is an angular momentum operator. What you can is three operators $\hat L_x,$ $\hat L_y,$ and $\hat L_z$ whose forms are a inspired by the forms of the three components of the classical vector $\vec L = \vec r \times \vec p.$
And really you could make lots more operators too like $n_x\hat L_x+n_y\hat L_y+n_z\hat L_z$ for any three real numbers $n_x,$ $n_y,$ $n_z$ or $\hat L_x\hat L_x+\hat L_y\hat L_y+\hat L_z\hat L_z.$
Now it might even be the case that you want to consider the system of the proton and electron, then for your generalized coordinates select the center of mass for three of the coordinates and the position of the electron relative to the center of mass as the final three. The Hamiltonian then emerges as a regular Schrödinger equation kinetic energy term (with a reduced mass) in the relative position and a kinetic energy term for the center of mass, with the potential all being in terms of the relative coordinates. When the Hamiltonian is expressed as a sum of terms that depend on just some coordinates, this leads to a natural separation of variables solution. This is just to say that if you are considering the proton then the position vector for your angular momentum might be for the center of mass of the proton-electron system, as is the origin of the standard hydrogen wavefunction. So $(\hat x,\hat y, \hat z)$ (which unlike the triple $\hat L_x,$ $\hat L_y,$ $\hat L_z$, is an observable since the components commute) has for an origin, the center of mass, not the location of the proton.
Now you can see another issue. The various angular momentum operators are not the vector components of some single vector observable called angular momentum. You cannot measure "the" angular momentum vector. And when you are in an eigenstate of $\hat{L^2}=\hat L_x\hat L_x+\hat L_y\hat L_y+\hat L_z\hat L_z$ you do not have a definite value of some angular momentum vector, there no observable called the angular momentum vector. So you don't measure it, and the particles or even the system doesn't have one. There are many operators, but there is no vector observable for angular momentum like there is with position or momentum.
So now when you say that $[\hat{L^2},\hat H]=0$ you are not saying that there is some vector that is conserved. All you are saying is that there are common eigenvectors to both the operators, and since one of them is the generator of time translations, the common eigenvectors only change their phase in time. You can also argue that $[\hat{L^2},\hat L_z]=0$ and $[\hat{L}_z,\hat H]=0$ so there are eigenvectors common to all three operators. But still there is no vector.
There isn't a vector to be conserved. This can sound strange, since $[\hat{L}_x,\hat H]=[\hat{L}_y,\hat H]=[\hat{L}_z,\hat H]=0$ but since the observables $\hat L_x,$ $\hat L_y,$ and $\hat L_z$ do not commute with each other, they do not have common eigenvectors so cannot all be observed. There isn't a vector to be conserved, even though any one component, if it existed as an eigenvalue or eigenvector would be conserved. There simply isn't an angular momentum vector.
And this is above and beyond how the position and momentum are operators. At least all three components of the position can be measured. Or instead all three components of the momentum could be observed. So the whole vector operator $(\hat x, \hat y, \hat z)$ has common eigenvectors, so can be observed. And thus you can ask if it is conserved (it isn't). You can't even ask about angular momentum.
So in classical physics you had a position and momentum, in quantum theory you replace each with operators, but at least the whole vector (one vector or the whole other vector) can be observed, so you can discuss whether you are an eignvector of position or momentum (but can't be eigen to both). Now with angular momentum, all you have are things like $n_x\hat L_x+n_y\hat L_y+n_z\hat L_z$ for any three real numbers $n_x,$ $n_y,$ $n_z$ or $\hat L_x\hat L_x+\hat L_y\hat L_y+\hat L_z\hat L_z.$ But you can't have more than one component because they don't commute with each other. The trade off between position and momentum has turned into a trade off between different components of angular momentum.
So you don't have three components of a vector, so if someone asked you what plane your alleged particle was orbiting you'd be completely at a loss. because the idea of it orbiting makes it seem like it has three components of an angular momentum vector. It does not.
I think many textbooks do not make a good clear distinction between having three observables such as $\hat L_x,$ $\hat L_y,$ and $\hat L_z,$ and having a single observable vector. if position and momentum are introduced first, you might get wrong ideas deeply and implicitly in your brain before you the time you finally get to angular momentum. Best to fix it.
And thinking classically too can get you into trouble unless you use a version of quantum mechanics that is compatible with whatever particular classical baggage you want to use (which is possible).
For your final questions, you cannot measure the angular momentum vector, not even theoretically, let alone experimentally. And it has the same relationship to symmetric as in classical physics, and the algebra is an algebra of operators, and the fact that they do not commute is exactly the whole point of there not being an angular momentum vector observable.