I would like to resolve a few problems I'm having regarding the exact procedure of Lagrangian mechanics when formulated as the tangent bundle of configuration space. These problems are not overly technical but I will list definitions below so that we are all on the same page and in the event that my confusion is arising from incorrect definitions that will be apparent from the start to the reader.
Definitions:
By configuration space I mean $\Bbb R^N:=M$, the $N$-dimensional manifold whose points are associated with the positions of our particles. This question does not relate to the generalisation to field theories. The starting point for Lagrangian mechanics is the tangent bundle of this manifold $\Bbb R^{2N}:=TM$. The Lagrangian is then a scalar function on the tangent bundle: $$\mathcal L:TM\rightarrow \Bbb R \tag{1}.$$
The action is a functional which a priori is a functional of trajectories through $TM$ (in particular, not through configuration space, in general, since $q(t)$ and $\dot q(t)$ are independent parameters unless we are explicitly on a solution to the equations of motion (EOM)).
When we say on-shell we are restricting our discussion such that the domain of the action functional is those trajectories through $TM$ such that the Euler-Lagrange equations are satisfied. In this specific case it is enough to specify a curve through configuration space since on-shell the $q(t)$ and $\dot q(t)$ coordinates are related through $\dot q(t)=\frac{dq(t)}{dt}$.
When we say off-shell we mean we are considering all possible trajectories through $TM$ with no guarantee that the Euler-Lagrange equations are satisfied and in particular $\dot q(t)\neq \frac{dq(t)}{dt}$ in general.
We assume throughout that the Lagrangian has no explicit time dependence.
Note: I use the term "symmetry" here when perhaps the more correct term is "quasi-symmetry" as explained by QMechanic here and in various other places around the site.
Now, Noether's theorem states that for every continuous off-shell symmetry of the action there exists a corresponding on-shell conserved quantity $f(q(t),\dot q(t))$, often called a "Noether charge". However, the Physics SE question here essentially asks if symmetries of the Lagrangian and symmetries of the action are equivalent, to which the answer (modulo some technicalities) is yes.
My problem is then how to define "symmetries of the action" and "symmetries of the Lagrangian". Since we are working on a manifold it seems natural to ask if a symmetry of the Lagrangian simply means that we perform a coordinate change on $TM$ (i.e. we work with passive transformations) such that the transformed Lagrangian function is of the form:
$$q(t)\rightarrow q'(t),\quad \dot q(t)\rightarrow \dot q'(t)\quad \Rightarrow\quad \mathcal L'(q'(t),\dot q'(t))=\mathcal L(q(t),\dot q(t))+\frac{dF}{dt}+\mathcal O(\epsilon^2) \tag{2}.$$
In words, our coordinate transformation induces a change in the Lagrangian to first order such that the difference is expressible as a total time derivative of some function $F(q(t),\dot q(t))$. If this is incorrect I would appreciate some guidance towards a more correct answer.
On the other hand, the action is a functional, and so a "symmetry" of the action (may?) require a different construction and so exactly how one would go about inducing a change in the action is another point of confusion. Since we are talking about off-shell symmetries of the action I assume we must talk about making some generic change to all admissible (smooth) curves through the tangent bundle and ask whether for such a change:
$$\gamma (q(t),\dot q(t))\rightarrow \gamma'(q(t),\dot q(t))\quad \Rightarrow\quad S[\gamma]=S[\gamma'] \tag{3}.$$
Again, I am unsure if this is an accurate description of what we are doing, and if it is not I would appreciate a push in the right direction here too. Perhaps the symmetries of the action also simply involve a change in coordinate on $TM$, and we don't have to go to the trouble of talking about transformations on the space of curves $\gamma:[t_1,t_2]\rightarrow TM$?
I hope this isn't considered too much of an information dump to be answerable, however I wasn't able to find an answer on the site that explicitly talks about the differential geometric structure and solves my problems.