There is of course the cheap answer: Sure, when you have conservation of velocity $\frac{\textrm{d}q}{\textrm{d}t} = V$, then you get conservation of all higher derivatives for free, $\frac{\textrm{d}^n q}{\textrm{d}t^n} = 0$ for $n\ge2$. Of course, conservation of velocity isn't really a statement in Noether's theorem, as Richard Myers explains in his elegant answer.
But I suppose you won't be very pleased with that, so let me go a bit deeper. Assume you have a Lagrangian depending on some generalized coordinate and its derivative with respect to time (or any continuous parameter for a more general case) and possibly time itself, $L = L(q,\dot{q},t)$. You will find in your texts that the conserved quantity (sometimes dubbed the Noether charge) is a function related to other functions that depend only on $q$, $\dot{q}$ and $t$, cf. the wiki-page on Noether's theorem. There is no symmetry that gives you an a priori relation of these to the acceleration. So these are the quantities that can be used to define conserved quantities, and acceleration isn't one of them.
There is an important observation hidden here. The information you are looking for exists on different levels of the description. The Noether theorem is beautifully general: given a symmetry of the action (often expressed as a symmetry of the Lagrangian), you get information about conserved quantities. The symmetry sure is a restriction, but there are still many distinct forms the Lagrangian could take. At this level of description, position, velocity and time are the only available physical variables. Only after you supplied a definition of the Lagrangian $L$, you can gain information about how a certain setup of position, velocity and time leads to an acceleration. Clearly, this is a much greater specification/restriction of the Lagrangian.
Just as a side-note: The fact that velocities and positions are more qualified to be the determining factors of conserved quantities also makes sense when considering the Euler-Lagrange equation of this prolem. It will be a second order differential equation
$$F(\ddot{q},\dot{q},q,t) = 0.$$
The solutions to this ordinary differential equation are completely determined by $q(t_0)$ and $\dot{q}(t_0)$ for all $t$ with $t_0 \le t < T$ (in physics, we often take $T = \infty$). So those are the quantities that a conserved quantity should be related to.
Everything I said can be circumvented by considering Lagrangians with a higher order of derivatives, see for example Derivation of Euler-Lagrange equations for Lagrangian with dependence on second order derivatives. In these cases, the Noether charges will depend on functions that also have an explicit dependence on higher derivatives, so you can use symmetries to directly fix your acceleration.