I am turning my comments into an answer in order to include a figure:
Quote from Motl's answer to a similar question, about electrons in an atom:
The state of an electron (or electrons) in the atoms isn't an eigenstate of the velocity (or speed) operator, so the speed isn't sharply determined. However, it's very interesting to make an order-of-magnitude estimate of the speed of electrons in the Hydrogen atom (and it's similar for other atoms).
That is why the electrons are in orbitals, not orbits. See this link for details of the measured orbitals of the Hydrogen atom,

There is no consecutive $Δs$ to a $Δt$ to be able to define a velocity.
On average is a different story, as discussed in the link by Motl
However, it's very interesting to make an order-of-magnitude estimate of the speed of electrons in the Hydrogen atom (and it's similar for other atoms).
In the strong interaction that binds the quarks, a Bohr type model is impossible, all successful calculations have been done with QCD on the lattice, so there is not even a classical approximation to the orbitals of the quarks. The same general principles can be used to get average numbers , as in the link. To ask about a minimum velocity of a quark makes no sense, in my opinion.